Scaffold Ga0073580_126887

Overview

Basic Information

• Taxon OID: 3300005265
• Scaffold ID: Ga0073580_126887
• Source Dataset Name: Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Texas, Austin
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8473
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location

• Location Name: Guaymus Basin
• Coordinates
  • Lat. (^o): 27.013056
  • Long. (^o): -111.519722
  • Depth (m): 0 to .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073580_12688710	F091133	AGGTGG	MGIFDIWSSWTDWLSDWWDAFKDKIWDIKVELWGWVDDIAKYWVSKANEFFDILNHTWSDVEDLMEKAKDYADDIVTDAILKIDNWVGTFGETVAELWDKLEPYFSNVITPIENMINEIQNTKIPSLEDIINSVRGSVDNILNTDIPFLNQSVSDLWNETNNIWNEIWNNIWVSLNNAWEDINNLWKTINEIPADVWNAITAGWDGFTDFLFEQGEKFIEKMLDIEVGMDDIIEELKRRVGGEKK*
Ga0073580_12688714	F009582	GGAGG	MAERRGRREFKGGTGRAVKEARVDIILQRLEENIGNEINAYPKHVYRYGVNNIFQRTFAYLLGWKSNGEPQKVGVTTGGLLKVAISGAGFEEIDTLEGTATVEWSDTLQFAWTPNRIRFEALNYPYLAKFSKDGLVWSDAVYVDGETPRDFDINAQYIKVRRYGGSDAKYMIIGMR*
Ga0073580_12688715	F011723	AGGAGG	MVIYNKGLGTDNSTDTGKEIFSLTSKAEEKYKVRRVIITDVVSNPLYMELWVERDRIGESIPLEVISDATPERIIDVDAEIPVGYTFSIKIKPQNAGNQGSVRGWVEYEIIE*
Ga0073580_1268872	F016235	GGAGG	MGKKEIPLFPPIFSHKRWSHRRGYQKCVKYIGIDKNNEKYGYGFPLCCVIKFKFPIHRYTPRTSEIAKLLATLRYLYGEEYMEELFMMAELEYRKMIRSVMLNENTTTS*
Ga0073580_1268876	F016098	GGAGG	MSEERRYVYMRRTKSGNGVKMRDGEIVYVASIRSLEQFLQGEAEYVAFARMPYRQIPNENNERDLVYTYCDVCGAGRFFRKVGQITWRCETCGTERTSTELIEKMRSILLTD*