Scaffold Ga0073580_117671

Overview

Basic Information

• Taxon OID: 3300005265
• Scaffold ID: Ga0073580_117671
• Source Dataset Name: Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Texas, Austin
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6642
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location

• Location Name: Guaymus Basin
• Coordinates
  • Lat. (^o): 27.013056
  • Long. (^o): -111.519722
  • Depth (m): 0 to .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F019588	Metagenome	228	N
F056226	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073580_1176712	F056226	AGGAGG	MRAYDILLFLVCLEASIGFVASLDLFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDIAIDGLAKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWATIQFLSGRSVKYME*
Ga0073580_1176716	F014691	AGGAGG	VSRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQTNTSLANTSSIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR*
Ga0073580_1176718	F019588	GGAGG	MSEEKRFEEEVEQIMKDLKVPFSVKVVIIDDRSGKIVFEWRRGEGNLVKGVQKTIEVVEKKIGIPVRSLLK*