Scaffold Ga0073580_115695

Overview

Basic Information

• Taxon OID: 3300005265
• Scaffold ID: Ga0073580_115695
• Source Dataset Name: Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Texas, Austin
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7891
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location

• Location Name: Guaymus Basin
• Coordinates
  • Lat. (^o): 27.013056
  • Long. (^o): -111.519722
  • Depth (m): 0 to .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F024453	Metagenome	205	Y
F040421	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073580_11569512	F007460	AGGTGG	MDDEEGIGIGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTTIVGIDETTPFAQALTLVPNLVNVFFYLPLIFIFTTFVWLFKYIVKRHKYTYYQYQKEEEM*
Ga0073580_11569513	F015290	AGGGGG	MLNNKGQAGEIAVFVILAFIVAFAYIFISPIVQNIKDIVPTIADATSWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV*
Ga0073580_11569514	F024453	N/A	SFAILQNLAQRLDLTDLERQALDFASSLLYQSVYGEEISEVGEEVKSVREEGREGDMEKVRSVHELAQVRGANAKQ*
Ga0073580_1156954	F019588	GGAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVKDLLK*
Ga0073580_1156955	F040421	GAGG	MREESVRAITMLMLAFTIGFKSIILFLQHSFGFALTLFLLTWTCICLAFPDDLIGASIGQDLKLGEVIEKWVRRRELKRK*
Ga0073580_1156956	F014691	AGGAGG	MSGREGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSIAATSNIIPTLTSFLPYLALVVIVAMAIGVFLSLVRGR*
Ga0073580_1156958	F017081	GGAG	MGERGRKWWWKGICILGIFAFLIATAQAIDITQITATETQIKITIANATSSGYIFVSPSNTSFPYAYSHQGNGTYTITATFLKPNNTYYVKACDNENCSDIMSVSVSKEEKLLGQNFTTQFNNLMQGGNLLNISKLGEAIPSVYTSLLTDMFWAMFFGVIFLAYWIRQENVMLPSIVGMISGVAMIGMLPPSAQHIAYILLVISIAGTLYTIIKARR*