Scaffold Ga0071346_1159487

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071346_1159487

Scaffold Ga0071346_1159487

Overview

Basic Information
Taxon OID	3300005263 Open in IMG/M
Scaffold ID	Ga0071346_1159487 Open in IMG/M
Source Dataset Name	Freshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid Only under anaerobic conditions - HA Sample 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	949
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humic Acid And/Or Glucose Under Anaerobic Conditions

Source Dataset Sampling Location
Location Name	Middleton, Wisconsin
Coordinates	Lat. (^o)	43.0603	Long. (^o)	-89.5717	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101440	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071346_11594872	F101440	GGA	MGAFMSTLAEISGYPLILCLTLGVAKCFVTLFEEQEWGWHLPDFIELMAMWVGYVWLSNLFSSRITHLDEGDAINLMAIFLVCISVVLFRGGDDHSFHP*

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