Scaffold Ga0074072

Basic Information
Taxon OID	3300005260 Open in IMG/M
Scaffold ID	Ga0074072_1000128 Open in IMG/M
Source Dataset Name	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005260 Open in IMG/M

Scaffold ID

Ga0074072_1000128 Open in IMG/M

Source Dataset Name

Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Australian Centre for Ecogenomics

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47228
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (76.74%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

47228

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (76.74%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Biochar

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Biochar

Source Dataset Sampling Location
Location Name	Sydney
Coordinates	Lat. (^o)	-33.917926	Long. (^o)	151.235347	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sydney

Coordinates

Lat. (^o)

-33.917926

Long. (^o)

151.235347

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015225	Metagenome / Metatranscriptome	256	Y
F028422	Metagenome / Metatranscriptome	191	Y
F050738	Metagenome	145	Y
F097431	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074072_100012818	F050738	AGGGGG	MHKVVFAACLLLASALTVAKDPTQLMLHKGARVGIVNIMDAEVTHFHTSKNLSESFFKTHLLNWNVDSMLADAVSQRLTQLELVPVPLGASDALLHDRDQNFLNNSVAKGLSKEVARQFAQLAAPERLEALIVLAPALNNSSQAAGGPYRKDLPDYLRGWGYVTGDPKNPPVLVNMTQVLLIAITPEGARLNAREWGGEYTDQWADYVAPPDPKRPPIEVLDKLQPLFGRILQKQAGHATTWITVTP*
Ga0074072_100012835	F028422	GAGG	LRIQGINQARLMEESELCIAESAKFGTPAQKLVASRLLAHPHAYRRWEAEHSQLMRRVSEHRFINRQVVALRSTALSLLHRKAVFEYLQERQLSRQQRHKLMSMFHTLKDYSASLIAEHGNYVRGASSYYCSHHLAKRLMKDSAFAEPLWLYQERYTDYFRVHCDVELAESQSEKQAVEPMRLLQPLLKKQLAEARQEILSMAYRPEKVWREVEIRRPTGDTERMRALGDTDIARILADGAEKRTRR*
Ga0074072_100012841	F015225	N/A	MKSSHGTFAAIVWIVAGALLYNTEPEARLISWQTPVFFVLGMFAAGVILGNLSYAGVRGLTHALVSAKIVTAPTRRAQIGLTVAGYLIFAAQVALIYLLAKWTIRVMFGVDGPF*
Ga0074072_10001285	F097431	GGA	MSRIDALEARRQELLNKCEEQRLELAYRVAQITPRNALTAWSRRGGSKGVTSLMPLIAGVGGLLMMLLRRGRRRSRGRAGLGVGLVTTVLALTTRATTVLRILAQLRALYMTYKATRRASPPRPS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074072_1000128

Overview

Ecosystem & Geography

Associated Families

Sequences