Scaffold Ga0071344_1000728

Overview

Basic Information

• Taxon OID: 3300005259
• Scaffold ID: Ga0071344_1000728
• Source Dataset Name: Freshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid and Glucose under anaerobic conditions - HA Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 251012
• Total Scaffold Genes: 236
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (31.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humic Acid And/Or Glucose Under Anaerobic Conditions

Source Dataset Sampling Location

• Location Name: Middleton, WI
• Coordinates
  • Lat. (^o): 43.0603
  • Long. (^o): -89.5717

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002824	Metagenome	527	Y
F040985	Metagenome	160	Y
F041560	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071344_1000728196	F040985	N/A	MIDVTESPSLISFAGNPVIFEACSSDYLVSLGNRAVFEMVISGIDTNIGHSFTLKFAGKTLVFKSAGITEFDGLLFEVAYYSQTFNDFASNIYQCFLENYDIQKSFDVTLGPAGTGDRKITLAAKYPGDEYSVTLTNVGVYGVSQGTNTPGTDDVYRDFFGILCLIRDYYGNTIGEDIKPTDLMGVARFDVSDYLRSKFAAWELTRFEFPEREFNVRMHGWDYLLKYKVSLAESIAGHVKGLQSTGWKYALAGGLNRELLTCLNENYQEYFSVEANKFRFLTWLPLTKYSRSGVTEKLFFLFQDNPTGVQYRLVVIVNFTDGSHKLINATPMAAFPPYSVAEFKVGFDHLNLVNAWYGRTVKSWEVVLMDSNDDYLSERRIFINDNRVFDNEKVFFYRNSFSAYDTFRFLGKSETNLEYERAVGTTIREEKYSFFNAPSRQFSAKETEICKANSGWISLAEKNCLRELLLSIEAYEQIGKELFQIVVKTAKVTPFLKDGEYLYNFEIEYERAYENAFFSIHVPESSANPVIPPEALTWDNVEVSFDDMEITFDQVTF*
Ga0071344_1000728197	F041560	N/A	MLSLLIADQPLDLSEDFSVSLNLKSPLFNDVGDYSFPFKVPATVRNMAILGWKNRIASCRSIYETYEGCFRWNGIVLFKGQVRIKTAGEKTFEGILYINKGNFNYEVKDLMLNRVDLGLKEFASEQDAINYFNWSLTHFYPEVDFSMPKIGNLDYFDPPATNPELMAYNYVFPDGWLHKTTSDGTQRTILVPFLYLKYVLNKLAENFGYRLEDEFFTSCTELTRLVIYHSVNLSEVLFGLQQLYYCRFVPKIKVSEFISGLEKWFNCSFHADSKQRVIRIVGNRDVLLHSELVEFSENILSISQEIPDEITGYRFMIGPDAGDKVYQAQLDAEKGITDYIRGAVGTFSEIPPYPFTWLGDIYYVVDTNTWWQLGVNGITFLIEWIQMPNGPVLTDKFFYKYGDEKNKFETSFSSLYDRFGVVSCGNLGTDKDKITPRLFWVGLAGGYGTPVELRGIADGGNFSLRYTGSHGIFNLFWKDWVDWIMKTRKTVKIEKQMDFIELKDIDFTKRYRMNGINYLISEISVTLNKSSIKSAQLKCFACP*
Ga0071344_1000728233	F002824	N/A	MTKLTNTALKPGNGKPTAEEMAVVKTIFNPAENKTEEKKPVLQIEPEKPVIPTPEPKKEMTMMEKILKIENLQLVIEKRAKLVQARSELDRFQISSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIEFLKTSFDASITEAENKITF*