NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0073583_1156458

Scaffold Ga0073583_1156458


Overview

Basic Information
Taxon OID3300005253 Open in IMG/M
Scaffold IDGa0073583_1156458 Open in IMG/M
Source Dataset NameMarine sediment microbial community near Loki's castle
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUppsala University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1572
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Community From Loki's Castle, Arctic Ocean

Source Dataset Sampling Location
Location NameLoki's castle hydrothermal vent
CoordinatesLat. (o)73.763167Long. (o)8.464Alt. (m)Depth (m).74
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094843Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0073583_11564583F094843AGGAGMVACVHVAKILPGKKEEFMQQLKEGFETGREALRSFGFTRIVSFTTPEVVGDGEALLVTVYEAEDPSVVERFYKLEPVLQQEARAHGVFVVPHDHEAVPKNVAFVDMDLTS*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.