Basic Information | |
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Taxon OID | 3300005253 Open in IMG/M |
Scaffold ID | Ga0073583_1147034 Open in IMG/M |
Source Dataset Name | Marine sediment microbial community near Loki's castle |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Uppsala University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8793 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Community From Loki's Castle, Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Loki's castle hydrothermal vent | |||||||
Coordinates | Lat. (o) | 73.763167 | Long. (o) | 8.464 | Alt. (m) | Depth (m) | .74 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024933 | Metagenome | 204 | Y |
F098316 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0073583_114703412 | F024933 | AGG | MIKVKRIKTGTLTSGVETLYDMLAGMSGKNRVIIAITTIPLTLQYLRVYRDADQIVDVNSLHLVAGSPWLKMDLPLAEGQQCKVGFYNDGALTTAKHITIIYTESE* |
Ga0073583_11470343 | F098316 | AGGA | MSIVRAEVIARMRVAFRGGLSASRFITDMRSSGLSYRRTDMLSDWRAINQLETKDGLARFVRKDRFPTDNAMAVVDWSLSKEFMYKIKVFSVTQAGAPITERFVNIMSANPLTPTQMEAEVTKQWQEWERYSAETITGLQVWSAVHKVME* |
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