NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073583_1038761

Scaffold Ga0073583_1038761


Overview

Basic Information
Taxon OID3300005253 Open in IMG/M
Scaffold IDGa0073583_1038761 Open in IMG/M
Source Dataset NameMarine sediment microbial community near Loki's castle
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUppsala University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27531
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (76.60%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Community From Loki's Castle, Arctic Ocean

Source Dataset Sampling Location
Location NameLoki's castle hydrothermal vent
CoordinatesLat. (o)73.763167Long. (o)8.464Alt. (m)Depth (m).74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004793Metagenome / Metatranscriptome423Y
F089742Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0073583_103876117F089742GGAGGMAYEKFMAIRGGKGKKFFGPYVTINKGGMSFNSYVTEMIGDGFKHVAFYFDKETRKIGLWFWKDSCPGSYSLLWHKSREHFTVNGRSFFRAYGIQEKIEKCNTRYFLLEKDEENKEDKDFYCIQLKSPKEKPVIIIERR*
Ga0073583_103876139F004793AGGAGGMTLEKAKRIVGNQGTWALRNMVRALKMLPRLNTPEDEERLEAAKVVLKSRRI*

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