Scaffold Ga0068637_1032462

Overview

Basic Information

• Taxon OID: 3300005247
• Scaffold ID: Ga0068637_1032462
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_T MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1053
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.539
  • Long. (^o): -110.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F031016	Metagenome / Metatranscriptome	183	Y
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068637_10324621	F002982	GAGG	MKFQFERHPHSICAVLTKPGECDRIITVARPSDAFDVLALDIHTAALKPLDALFALPRVVCVEIERREGGWRVEVAYWSKGLGTLAQYETDAATLSEALARCVWALA
Ga0068637_10324622	F075805	AGGAGG	MRVRVWHGWRGVHGNKDVSQFVWIEFDGELLGSLVVEVDEDRTDERAFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYGSIEDAARRGWHNDLVRVGAYDAPTLELDEWLSRYEEEE*
Ga0068637_10324623	F031016	N/A	TIWKGSRRVVLGDDIEFVEHETFIGEELGAVWEEENSRGTQTVFYRTEGGKIVVHQVLWSRWEGEATHAYIHVFPSMGGVNGAAAMFWRELVQAGIIPPLTVGLDE*