Scaffold Ga0068644

Basic Information
Taxon OID	3300005244 Open in IMG/M
Scaffold ID	Ga0068644_1049929 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1000_T MetaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1000_T MetaT (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3413
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3413

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.539	Long. (^o)	-110.798	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.539

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029452	Metagenome / Metatranscriptome	188	Y
F033055	Metagenome / Metatranscriptome	178	Y
F082733	Metagenome / Metatranscriptome	113	N
F092114	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068644_10499291	F082733	GGAG	MQFNPNTSHYASAVGAWLDSNFRDQFTTTVAFMEKLKQRGAFKRGSAYLVQPVFGAGNPSVAGVSNFNTAMNIPADTGLSAVYTWSWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSTVAQFGMVISNDLFSNTDATLGKIAGLPYAVDRPTTTANSFGGISRSNTTNPWWRAVV
Ga0068644_10499293	F092114	GGAG	MRELVSITRHKMEQLLGDNPPKRDTWLLKCRRLREIVSNLPANQLISTSIPEGHSNMLLINITIKAYAMMQLLRGTVIDFGDDTELFQPKFGEFLASNELALRDAIMQRLVVGLGAVCVVGDKQHGWRLQSISPTDLWWDCTTGDVMQPKWIAREYRDGDGTRYREVWYADVYHRYKVDSTDVETFTNPYGVIPIVLFPAHHIPDTVYPIGDVELACPQQFILDEIRRTYLNMARRGAGFYAVKRSSIDESELSRLQNPEEVYILVNEQDAILPIPTPAPNPEWQALEALAKQDMDALLGVSEYVRGVLPTGRAKFATEVVAAVAGQTVRIQSEWYNTKIALERLAKVYYKLHNPMGTAIPRALEDSITSANELMQTNMVGGNNSWNISVGQSV*
Ga0068644_10499294	F029452	GGGGG	MIYEYRCANCGWLTVAKRTVEQRDVVPRCERCGTLTKRVFPPRAQIVVPRAFSLECAREAGKLVLPSTPEEKRYWDTFGIVDDDGE*
Ga0068644_10499295	F033055	GAGG	MVYPNQVISNLNWTDSAGVGILLALGENDGIYIYNTSPVNELELGMPSEVVNCEVRVQSDGMNPPLLLNFYRAGTPIDSVSVPTTNNWVVHTLTVDRWDSVELLVGIGGTVAVDFLRAEPYGGSPTKRTLTGVGI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068644_1049929

Overview

Ecosystem & Geography

Associated Families

Sequences