Scaffold Ga0073579_1322376

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1322376
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 862
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077803	Metagenome / Metatranscriptome	117	N
F105495	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_13223761	F077803	N/A	MISEVIPQDYIVEKFFQYAGYPKYKKITNVYEGGCPLCREGKSWGKKRRLYFVAKENYIFCHNCGWSGSPLNWVQEVTGKNYIEIINECKEFNTFTIPEEKANTLIPEKQPESLPGDCINLYDKLQYSFYNHEDMVT
Ga0073579_13223762	F105495	AGG	MHQPKEPRAIVGPSGDTARPVLKTVRIGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK*