Scaffold Ga0073579_1191593

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191593
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105398
• Total Scaffold Genes: 146
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (23.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002336	Metagenome / Metatranscriptome	569	Y
F019142	Metagenome / Metatranscriptome	231	N
F052952	Metagenome	142	N
F095490	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119159319	F052952	AGCAGG	LSIMSVKTKEFIHKVNSHLNGNVIVLGGWSKHYNGYIEHYDKHWIDISITPESVDLVCELGLKLNINGGHSWGGHIINQFTVMCGVKPNRYFLDVFVSNKLEGYKEINNLKILTPQANIKWHQEAYAMLQYKWLSEKITNLKNLYNI*
Ga0073579_119159368	F019142	N/A	MKKLGAWLIKTSHAIAKWWGGLTHSIKCNWNKIIFAISFKMKDCKNEKCICIR*
Ga0073579_119159375	F002336	N/A	MPTVKFEGGKKTFPYNAVGKAQAHAFAQLMKGKIKNNPNYGMEKKTVSGY*
Ga0073579_119159398	F095490	N/A	MDNQFCKKCESKNIVLETFEYLGDYASHDYICLDCKHQGTLFYDVKYTITNNYFIKNETKKTNQKEKT*