NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073579_1191593

Scaffold Ga0073579_1191593


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1191593 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105398
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (23.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002336Metagenome / Metatranscriptome569Y
F019142Metagenome / Metatranscriptome231N
F052952Metagenome142N
F095490Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0073579_119159319F052952AGCAGGLSIMSVKTKEFIHKVNSHLNGNVIVLGGWSKHYNGYIEHYDKHWIDISITPESVDLVCELGLKLNINGGHSWGGHIINQFTVMCGVKPNRYFLDVFVSNKLEGYKEINNLKILTPQANIKWHQEAYAMLQYKWLSEKITNLKNLYNI*
Ga0073579_119159368F019142N/AMKKLGAWLIKTSHAIAKWWGGLTHSIKCNWNKIIFAISFKMKDCKNEKCICIR*
Ga0073579_119159375F002336N/AMPTVKFEGGKKTFPYNAVGKAQAHAFAQLMKGKIKNNPNYGMEKKTVSGY*
Ga0073579_119159398F095490N/AMDNQFCKKCESKNIVLETFEYLGDYASHDYICLDCKHQGTLFYDVKYTITNNYFIKNETKKTNQKEKT*

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