Scaffold Ga0073579_1191512

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191512
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53603
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (61.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049214	Metagenome / Metatranscriptome	147	N
F052865	Metagenome / Metatranscriptome	142	Y
F064083	Metagenome	129	N
F083393	Metagenome / Metatranscriptome	113	Y
F086698	Metagenome	110	N
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119151213	F106168	GAGG	MKLQRKIKTFYKRNTMLSIGLVGAAAYVYLQKQGMMTSLAPAPVKQATSAPVARYAYDAYPPIRNEPYTDASHFFGPADGDPVFYGF*
Ga0073579_119151215	F083393	GGAG	MKLGKKVMKFADDYPLAVLALGTVGIMYAFENVGQINGLGQATFKTSGTNMDDIFRKTGHTGTAAPGTGRWDTVMPSPSGPQVRYDAAYHTQAIMMDPELEKTLAERGKRPVVQSPSIRHGYEPMIFAGMRQTL*
Ga0073579_119151218	F049214	AGAAG	MANLNQGYRSGNAFGRLANVSYENYTGEDIALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTVNVGITAVTSAVATDFDGTHGEALEQYGLASISAYYDLGTGTVAETDYTGNILAPDYDSGFITFKALEPYAGNLYHLCPTLPLQPKYMVKDTGDWHSLNAYPPYDTSNGGLPIGFKGDGTAANTVQVGSVSAKLYLKQPSGVSKHTLDEASDGESARATASETTLEGISGFMDGEMSPLPNPDWSFGMIVEHGEASLPAFRVVNDSDEYILDGRVRLVGWKYKILELSQEQLATLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM*
Ga0073579_11915122	F086698	N/A	VAQGNDSDKSQVHGTTGSGNILPISAITQETATSLLFTRQGREDFAATSHPRMRLTHNAEGSTVSYQARQLPLLCGLEDVVAQTGFLLTADSSNTVTIMVGGQTVSTSDGIPLVAGQSIMIDIVRLSKIYAIAAVDPSGETANLFWLDM*
Ga0073579_119151222	F052865	GGA	VKTHLDLKALGVVVLGLSLPSMAGYLASTSVGMRAMSYVDMVPGMTTNVGKAALAVGLTAAVSYGMSGLGVISASEALTANMIALGLVTVGALQTMNLPVGSGLVSSLPSSGGLAGLGSASYGYIGNYHDTGMGVGAEMLPQPQSGNLFGVRANIF*
Ga0073579_119151254	F064083	AGGAG	VHIMGGKGSGRPIGDKNKIDPFDPNTWPADSKRRLEREMQIKDVLMGSKVVNSPKKLWIRERTAHLEGDKVGVQLDQTMLDTVADMQAMYKLGAFRYLPLSVREVFLRTGMYNLPFDKDAAFSNDPKSRPWTTTALVRMSLEVMRLYLMGLDPYMSRAMRSYLSVDLHKIGMKRMTNSVQRAAEFDKVYDYEDDSEFDFSGLMDEDLEF*