Scaffold Ga0073579_1191434

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191434
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17617
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (59.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024583	Metagenome / Metatranscriptome	205	Y
F031924	Metagenome / Metatranscriptome	181	Y
F033444	Metagenome / Metatranscriptome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119143419	F033444	AGGGGG	MEIKKLLTWVPIMAAVLGTLYTGINTIIKLNNTIEKHTLQLREMSTTISAIDERFSIEVKNLNRAYTEGREEVFREMTNARSELATARAKVEALNDSYYKMSNSVEDLKYDLKDFKREVTGDY*
Ga0073579_119143423	F024583	N/A	MKNIMIALLVLCFTATVGNTNENNIINKVTTHISNEIQDIKEFQKDNWEKGKIQTANNIAMIKSWFVKN*
Ga0073579_119143424	F031924	AGGA	MDDRGPNDLERIIDDKDKIITHLKHDNKTLAKEVSDLIEEKKRLLDNQSKK*