Scaffold Ga0073579_1191348

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191348
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53670
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (73.91%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009561	Metagenome / Metatranscriptome	316	N
F011522	Metagenome / Metatranscriptome	290	Y
F023860	Metagenome / Metatranscriptome	208	N
F028035	Metagenome / Metatranscriptome	193	N
F045370	Metagenome / Metatranscriptome	153	N
F046634	Metagenome	151	Y
F067121	Metagenome / Metatranscriptome	126	N
F085570	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119134827	F045370	N/A	MNRIFPTSSGTNVSGDLLKKAKQHIKTGKKFINKKVLPSAAKNYKSYVAPTVGLFKGAANIATGVGKLALRNPLLAAGTYVASKGFNPKGKFSKGKKFNEFGDAGKVLSKGGRKFYG*
Ga0073579_119134828	F067121	GAGG	MINKIAKLFVKKKPTLLEKAKSTATSYGSKAKAKGMDAFGKMQQSKIYKDASSSIGELSAKYKKLPKNYKTGIKVAGATAVVGGAYAAGKSKRKS*
Ga0073579_119134837	F028035	GAG	MITYEVMQRIEGDTEKHSNYELVQYEFPFPENSVLIERDKEMNRILNKPIIITNE*
Ga0073579_119134838	F046634	AGGAG	MTTQPSFVPYTESKSVEDRIAYVKANPHKYMPKAQYDLVKSLHSKIEALDSKMNEILAKK
Ga0073579_119134848	F085570	GGA	MHIDSYKIWSYDYDYKNGKKSKTTSIKQHLVSEECIDSRGLINLLSDLDNAWHNDYGKNIKIEVTFEPHEGE*
Ga0073579_119134849	F023860	AGGAG	MDRMKEMFELRNAIRIFLEEKLEAKVQGAGMSITEPSTADISFKMNNINYLITIDEV*
Ga0073579_119134852	F009561	AGGAG	MTELKDEHLETISNNRGKKYEIDKMVEQLSDARESVAVLGNAIECGFLHDKHSLILQEWIVEYEQLIEQLDTHLTEMRTHGR*
Ga0073579_119134865	F011522	GAG	LFRAIISQAIHDAMYNGLDKYYLIDKRNAIDWLIGNSIDFRTICHYAEIDPEMACKKFTAAMKLDLYTLREDQHKVLSKPRKKYKHKGKFRLTFNEQSLEQTD*