Scaffold Ga0073579_1191250

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191250
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39173
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (47.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018014	Metagenome / Metatranscriptome	237	Y
F033992	Metagenome / Metatranscriptome	176	N
F102084	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119125018	F102084	GGA	MKIESAILIVMNTEKHTSNDTNSEKTNTQLMISPLPNLIATGLIFLTVFAIITAGYIHGHMSISAVYKTLNP*
Ga0073579_11912504	F018014	GGA	MIVNLTKNEIKHLVYLMGKGDGDFFSDQLNEKLLNKLESLIEVCTCKEKDSETEQ*
Ga0073579_11912505	F033992	N/A	MTHEYDLTDQSDLDMLDEVDGEYYNWDQNHSGYLWLTDECVDKYGLERGMDVEPIAWEIFIDDDYYDEYRERGLKWDLYIQQYASVHDKDGKYLRDCTYEDWEVCKANGIKEEMLSDEGCEVMGWCDG*