Scaffold Ga0073579_1191224

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191224
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 137667
• Total Scaffold Genes: 137
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (26.28%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017811	Metagenome / Metatranscriptome	238	Y
F018707	Metagenome / Metatranscriptome	233	N
F020012	Metagenome / Metatranscriptome	226	Y
F027898	Metagenome / Metatranscriptome	193	Y
F030109	Metagenome / Metatranscriptome	186	Y
F041708	Metagenome / Metatranscriptome	159	N
F051859	Metagenome / Metatranscriptome	143	Y
F061603	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_1191224130	F020012	N/A	MAEELIPLNAFKSVLTTLTGDKDIVYSSPKGVSTILLSAQITNTGTINEPVTISITSNRDLPVPQVDSISNTGSFFSASALIEKNQTFIEKESAAYINFQNNLTQVPFSFTSSFFEEYVRTAVDGVEADLIVGGTLQSKKAALSYYNKNGEILIPNAYFTSSYQSIDYATKLVEQILINESITGSVDVARIYQDSVTQSFDNTLIAETGSISASVDLFGAISETISNPTRVRQQPVDLITNVTIPAGDSLSPIVAGKLVLEQQFSLIVSGSTNLTVILSILESANE*
Ga0073579_119122414	F051859	N/A	MSRKIGDTIEFKFAGGKEKGTIKEIKKKGNKILSYSIWDGKYNYNVAKEMIL*
Ga0073579_119122416	F041708	N/A	MENTNNYSNEPIGEWKIGDDEHFISFALKKKPKWFHRQMARFFFGLRWFDYVSKSPSKGIKVGSVSKGTPKRRFKS*
Ga0073579_119122425	F027898	AGGA	MKKILLLLISVLFTLSTYGQSEINYSPVYSVTKVGDTLTMKFQYNKGDGGDLTLAQFDFEYNNKLLSYISSTSQAPNGASYARNNWTGYKFNPKADSDEDDMDVQYTWWKDEAGANSYSTSANWSVERTTIQHSTAYVDGNEFVKYQFK*
Ga0073579_119122445	F018707	N/A	MKNKPLANVDWRKYFSLNNTTLNEYLYNYGDDFLTQSLFLLIDAHRRNIPSIILIEFSNIDIVSVVEKKDYMLALHRLLNLCERMEKYEICAEIVKYEKTIKPKRTNPSKKSHKITIIN*
Ga0073579_119122460	F030109	AGAAG	MSYIKVQLPERYKLKERIETNKDMWIPFYAKHGAYIGSSESVDYLTEEIEKYYDSKKS*
Ga0073579_119122472	F061603	GGAG	MPLVTLLIKFHKMSWSLFKRNILRKTNPNNNPSLNINEVATIWADEYDAVVKRGKDLLNLESVQKGNKELAKVFFQLALLKGLATPPGVDFSLVNEFGNGVKAYWMGAQMNPFPIPLIPAPGTIQNIVVNSNIASNPGTWPMYPPLKPANKQVIMVNMFILAATVHLFSVGGIIQTTSLYPSAPSPIPSPAVISWTAYLIPPNIPIPNINFPSS
Ga0073579_119122495	F017811	GGA	MKKYAMLQIDADVHQLLKCFCKDKGYKMNGLVESLIKEKVTPNQTIPTNVLRSK*