Basic Information | |
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Taxon OID | 3300005239 Open in IMG/M |
Scaffold ID | Ga0073579_1191224 Open in IMG/M |
Source Dataset Name | Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 137667 |
Total Scaffold Genes | 137 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (26.28%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine |
Source Dataset Sampling Location | ||||||||
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Location Name | Gulf of Maine, USA | |||||||
Coordinates | Lat. (o) | 43.2393 | Long. (o) | -68.368612 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F017811 | Metagenome / Metatranscriptome | 238 | Y |
F018707 | Metagenome / Metatranscriptome | 233 | N |
F020012 | Metagenome / Metatranscriptome | 226 | Y |
F027898 | Metagenome / Metatranscriptome | 193 | Y |
F030109 | Metagenome / Metatranscriptome | 186 | Y |
F041708 | Metagenome / Metatranscriptome | 159 | N |
F051859 | Metagenome / Metatranscriptome | 143 | Y |
F061603 | Metagenome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0073579_1191224130 | F020012 | N/A | MAEELIPLNAFKSVLTTLTGDKDIVYSSPKGVSTILLSAQITNTGTINEPVTISITSNRDLPVPQVDSISNTGSFFSASALIEKNQTFIEKESAAYINFQNNLTQVPFSFTSSFFEEYVRTAVDGVEADLIVGGTLQSKKAALSYYNKNGEILIPNAYFTSSYQSIDYATKLVEQILINESITGSVDVARIYQDSVTQSFDNTLIAETGSISASVDLFGAISETISNPTRVRQQPVDLITNVTIPAGDSLSPIVAGKLVLEQQFSLIVSGSTNLTVILSILESANE* |
Ga0073579_119122414 | F051859 | N/A | MSRKIGDTIEFKFAGGKEKGTIKEIKKKGNKILSYSIWDGKYNYNVAKEMIL* |
Ga0073579_119122416 | F041708 | N/A | MENTNNYSNEPIGEWKIGDDEHFISFALKKKPKWFHRQMARFFFGLRWFDYVSKSPSKGIKVGSVSKGTPKRRFKS* |
Ga0073579_119122425 | F027898 | AGGA | MKKILLLLISVLFTLSTYGQSEINYSPVYSVTKVGDTLTMKFQYNKGDGGDLTLAQFDFEYNNKLLSYISSTSQAPNGASYARNNWTGYKFNPKADSDEDDMDVQYTWWKDEAGANSYSTSANWSVERTTIQHSTAYVDGNEFVKYQFK* |
Ga0073579_119122445 | F018707 | N/A | MKNKPLANVDWRKYFSLNNTTLNEYLYNYGDDFLTQSLFLLIDAHRRNIPSIILIEFSNIDIVSVVEKKDYMLALHRLLNLCERMEKYEICAEIVKYEKTIKPKRTNPSKKSHKITIIN* |
Ga0073579_119122460 | F030109 | AGAAG | MSYIKVQLPERYKLKERIETNKDMWIPFYAKHGAYIGSSESVDYLTEEIEKYYDSKKS* |
Ga0073579_119122472 | F061603 | GGAG | MPLVTLLIKFHKMSWSLFKRNILRKTNPNNNPSLNINEVATIWADEYDAVVKRGKDLLNLESVQKGNKELAKVFFQLALLKGLATPPGVDFSLVNEFGNGVKAYWMGAQMNPFPIPLIPAPGTIQNIVVNSNIASNPGTWPMYPPLKPANKQVIMVNMFILAATVHLFSVGGIIQTTSLYPSAPSPIPSPAVISWTAYLIPPNIPIPNINFPSS |
Ga0073579_119122495 | F017811 | GGA | MKKYAMLQIDADVHQLLKCFCKDKGYKMNGLVESLIKEKVTPNQTIPTNVLRSK* |
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