Scaffold Ga0073579_1191211

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191211
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30724
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (61.02%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004191	Metagenome / Metatranscriptome	449	Y
F005335	Metagenome	404	Y
F007551	Metagenome / Metatranscriptome	349	Y
F016880	Metagenome / Metatranscriptome	244	Y
F044730	Metagenome	154	Y
F065117	Metagenome / Metatranscriptome	128	N
F068223	Metagenome	125	N
F071648	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119121111	F007551	N/A	MQTWEEMLITKILTQAVEDAKYTGSSKFDLEHKIESINWIMSGDPQFKYYCKLLNIEPSYIQNKIKNYGDTRITSQQKVILKPIVEKLLKSKKYQNNWFAKHVEERI*
Ga0073579_119121118	F071648	AGG	MKYNCSVCKKKFTHKKTETLVGKLGPIPVNLCKTDLKKIMRNDELYLNDKR*
Ga0073579_119121119	F044730	GAG	MIKGKLLILLFVILVGCTSTNKKMETHPTNNENALEALDKFWELLRPLRILNGVSTVN*
Ga0073579_11912112	F004191	AGGAG	MLKFKEIMATLFAVFGVFALIGATGAVETDQWVLALALVVMGTCTMFLSIICQEK*
Ga0073579_119121121	F005335	AGTAG	MKVIVLLIVVMTICSCGIKPKVSCNVNDINNVITDCKEQPQFGISKEF*
Ga0073579_119121139	F068223	N/A	FVRFLGPVGLIIQAFVGLFTGIKDAIKEFKESGSILGAIGAFFGGVFDSIIGSTLNLLSDILGFVVKKLGFEGLGEFISNLDFTTDGITRGITFVIDKIKGFFLGIQDGFYTFVNGAIKIYNKIPFVDKLDLLETRAIAKERGEGVKGSEGTNAAETVALNDRAKVEGEKIRTAQKSSTMVTAIGDTTTEKFDVKLENAKTLKAEQAKLAEQQAAMRNFQNINAVNNSKGATTVNQTQVHSSGEPSTEHSDLTARHLVAASYA*
Ga0073579_11912115	F065117	GAGG	MKNKKKDKKKKVEMEVQGYYTDDNGFWTIYKTESGMTVMKKEKKSNDS*
Ga0073579_11912119	F016880	AGGAG	MITPEMYNELRIQEQQGQEMADEKNKSIQLRKDIMKLALAESATDCTIMCGTLFAKFNVSIHEQMAKNLKTTLQTFFDNRKKNDCHVQMSGTLPDNEYAYDFMPIVDFRTEGVGI*