Scaffold Ga0073579_1191171

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191171
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69094
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (45.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004164	Metagenome / Metatranscriptome	450	Y
F005012	Metagenome / Metatranscriptome	415	Y
F006003	Metagenome / Metatranscriptome	384	N
F007392	Metagenome / Metatranscriptome	352	Y
F012576	Metagenome / Metatranscriptome	279	Y
F025396	Metagenome / Metatranscriptome	202	N
F025596	Metagenome / Metatranscriptome	201	N
F044735	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119117117	F044735	N/A	MIKNYLIKGIIILFAAATLFLILEQKVDERIAIMQKINNNQTT*
Ga0073579_119117122	F025396	AGGA	MRLDEKKFQTGEIPQKIQHILLNFGEKQKIGISEYLRTFNQCSLRSITEHMDETSLSEIKRYLSCYLIHSKNKKVIITSGHII*
Ga0073579_119117127	F025596	N/A	MSKYTNTLVNLSYVSGMAILIIGLVDRKMRFMDVSDIQWIILSLVLGIFLPILLNALFFKKFSIHFWNKFN*
Ga0073579_119117133	F012576	N/A	MNTLLAYIQFIFIGLVIYGAVLTFGDASVNTSTSGIVAPILAWFAGTGLRASFNSENNNQKKGSIFMAVILLAVSYLWINSTGYWYVANEIEISGKNLLVISFFIGFLSTVKTISEINKN
Ga0073579_119117134	F005012	GAGG	MKIILILLLLPLPSLADDLKLFCKGEETKYLEDDPNSKEVITKVIGIQLYEAGMRLDGVWFDNKSDFTEDYMLERSYVKSKDNIRGARNFSTNSFIEGRKIQTVKVDNVEINILSNEVYWMHKFNRLEITDTETDIIYAFRKEFEGNCK*
Ga0073579_119117135	F007392	N/A	MFIMLFCSFAYGEEFTMICEGERTVRSFSNSELNDLDFESVLLKIKKNSMEYIGLNSGRSYVFSNKEYTAPKRPPHEDIKIKVLYEFTQKTIKASQIITDIGNSEESSISRFSLSINRLTGNFSEIESISNKKTLQKSMSNNFQALCKREDRSY*
Ga0073579_119117165	F006003	GAG	MKKENLVKHYFALVAMLFVVSGSFVSNVMAADVDYQVICSGNTVKLVALSDEGNNNLVSNALTSCSFCNLGEDEDFYNVSSITETFSGKSPILKKVYPSFISNKTASNFYSQAPPHFS*
Ga0073579_119117173	F004164	AGGAG	MPYLHTIRLIILLLFLPVMGQATEDLKYSYVHDSIGDKDDAEGDVTFRTLQVDGVMYEYAHVNIKWKGGFFKSSITDDFIQKKEIKNGLVLYDIVEGDQKKGYSVFARHIQVKDYPVGFETKKIIKDEGRHPAFSDYDWIFKFEAKNVENIEINGQIRQAIHTKLWGSRPTSTTNCQSLPSRGFSTSTGEIYVETWFDLDDSKLLKQEFTKYGCVPSRIIVSKETWVLKN*