Scaffold Ga0073579_1191130

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191130
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34770
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (62.75%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F005431	Metagenome / Metatranscriptome	401	Y
F011253	Metagenome	293	Y
F013234	Metagenome	273	N
F015659	Metagenome	253	Y
F015660	Metagenome	253	N
F020445	Metagenome / Metatranscriptome	224	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119113010	F001839	N/A	MKYFEKIDKDLINNRALNSHEKLIYIICKSFENAPRGCRISHKYLMIRTGIKTKAKLISHLDRLSLFGLMARKQIDNGTCHYVFDKPTMQEYIQHNLNKRRKISLSKNRHKRNLNKALSYPNIINMPKVIK*
Ga0073579_119113011	F011253	GGAG	MKDRKLELNNIIKNIAKNKSLPYSAAITKIKKDRKGYFQAKDIKLKSKSLSTDRFQQYLKTIQEEENDT*
Ga0073579_119113012	F004629	AGGA	MIPSKLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPRMRIRLNGEQLQVYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKQFFLPSSHEKVRSDYYKALYELMSLYNKHGYKYICK*
Ga0073579_119113013	F013234	N/A	MANIKYNKTIEKTILNRLCNGESIRKICKDPEMVSWATFSQKLKDNEKLQDQYYTCKKIGIEMVIAEAQDKLMESISTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVFSPVRYGKDTKLTLNGGDKPIEIKWQQ*
Ga0073579_119113015	F015660	N/A	MQHLTNNLELLQTMANKTKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRAKYTQAKQDGIEYSLSDAQSLINEAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLSPKVYGKNDNLKVSGDSNSPLIVKWNG*
Ga0073579_119113020	F005431	AGGA	MMDFDDNEKGYSAVIYIMESSNSVVVHFGGFNDLRECRYFSSHIMEDFGIEQLLNVPQGVTVH*
Ga0073579_11911303	F020445	AGGA	MSDFDNTAALWKRQPRDTDVAGKKYPHYNGNVTVGGKKMNLAAWLNVSKTKEGQPDISLKISEIMTKEDAPF*
Ga0073579_11911304	F015659	GGA	MKERTLQDAIVQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTDSTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPKVKEVAKAKPIVKLVPKAKVNIEELANDWIEVLKKTAENSTSLSNYEKNLNVLRKEYISDLHQIYTDLIQQQRIDSAYISLQKQITNRKI*