Scaffold Ga0073579_1191090

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191090
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68332
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (37.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002188	Metagenome / Metatranscriptome	585	Y
F005130	Metagenome / Metatranscriptome	411	Y
F011405	Metagenome / Metatranscriptome	291	Y
F081358	Metagenome / Metatranscriptome	114	N
F103238	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119109022	F103238	N/A	MTVSKIKKTVKEILTTNLVDWLSKSQIQLIELEVEVAEIDEKSVCEFIFDKSVTFQCSLMDD*
Ga0073579_119109034	F011405	N/A	MNYGIKITKPWSKEMYDHNEMVSEVMKSEIINQIKKNQNNYDKLNELMVLCGGIKYGDGYSIEELFEDCLNEVDNVQNYWLNEEFPYAVSQGLVNDINLNFIGYDK*
Ga0073579_119109062	F002188	N/A	MAVNELKKILEQVHELNEFKLVVESLTHPLYYIWKLPNVKMKDLDIKLRQFRKEHARFDIFINGQYILEDDYIAEHSGNNLFIKFKKSNFNFAIVSNDDIKVEGDIESV*
Ga0073579_119109070	F081358	N/A	MIKLKNILKESAQSDKLSREIDKSISKIDDSMSYVDFAHAVAKVLKNEYGSHLYDKFIKELKKKL*
Ga0073579_119109074	F005130	AGG	MSKNKIKLGKVTRAVGDTPYKGGHNDIRKTNYDVKITEDGKLDLYTHKKETKEL*