Scaffold Ga0073579_1190949

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190949
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63245
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (73.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005313	Metagenome / Metatranscriptome	405	Y
F049290	Metagenome	147	N
F053543	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119094911	F049290	N/A	MNKRLFTFGCSFTSWKWPTWNDYIGLNFDKYYTLGCGGADNKNILYRLLQADKKYKFTSDDTIMIMFTSFNRMSYVGEKDFQIHNIGDLVDHNVKAHPIGKNYNFATAVYDSCIAIQSIESILKSKNVKYEFLQSMKHDFYNDDFEMSGDVKEDLNYCLDLFKYPVMENWVYENYDFMKEKIIWQDEGSRDGHPTMKHHFDFVKEFFPQYITDKVIQYYDIQQENFSDENTEQQEEIYRDIQKEFFENEKIKTYTE*
Ga0073579_119094935	F053543	GAGG	VNKCNYDCFRKEHMPFEPKKWKGFDNITQKSQYNAYMEWCGGVCYSSPENFDNEYCDNFDIQNLKNEDNLYKKLKGYICMCRRYLEYQGYSRPEFMTEEYMRENMDNFRQLLKENIDEILTNLSMTKWLYSIIICFIDLGTEEEKTKCKLLVSLMQLNRINLNRSRTLYSEDEVTQQSDKDFLVNNIISLEDKSFENVISVLMNNDMVKVLRGF*
Ga0073579_119094962	F005313	AGG	MIKLQIAANGTQTITKVCNMCGCHIDDLEVEDIMVKSNTDMRVYDKDGNEITRTELPSNLKECQCEECE*
Ga0073579_119094972	F005313	GGA	MIKLELKRDGTQNITKVCNMCGCHIEDLAVEDIMVKKDSDVTVKDKDGNEITRTELPSNLKECQCEECE*