Scaffold Ga0073579_1190826

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190826
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74410
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (42.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040396	Metagenome / Metatranscriptome	162	Y
F060451	Metagenome	133	Y
F080077	Metagenome / Metatranscriptome	115	Y
F099144	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119082620	F099144	N/A	VAQFTFNRELGANPAGITRFRQYRTEDGGNITVNYITEDTTEGSEPRADLFAVTSSATGTGTVTLQAGSHAVGRIYIRSGTNGAVMGEVDSPKISNRQDVSFTFSVGASVENYLYVEKKDRSPCVYRVTYTAA*
Ga0073579_119082648	F060451	N/A	NQRQRSNPVEHEQISIGLTLEDEFTLTRIRNGAKQLKGRDRDHYLWQRIFRMVCRERAYKAVIEELGIMVDPSVDVFDDKNEENHVK*
Ga0073579_119082658	F040396	N/A	TTAETQWKLFATTNASPVVQGSGVYDPRAGNNFLSGDEKALAICEVCWILPDSPPERQDVALQPDGVTESSVYTSTQPR*
Ga0073579_119082659	F080077	GAGG	MAINPNQISVAKIYPGNYANVLRYWHEEKTMQFENANGVSTSYTNQPVGGPVGVIFRPGWVAQQAIGYVDLSYQALGSVTSWSTTPKPMALVLT