Scaffold Ga0073579_1190778

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190778
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17619
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014328	Metagenome	264	Y
F032037	Metagenome	181	N
F080519	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119077810	F080519	N/A	MTTKTTKEKTMAKNSCKLCNEKPSIIWTQAFNTYICKPCMTINADTHNDKIGKYPNNYIPSDYYTLINN*
Ga0073579_119077815	F014328	N/A	MFIDYEGKIKLLKKKLRMSKNISNDLEVIIESQKKEIDTLKQIISLQELQIKPRTKTRTDKIFQLKNVIKKCREKGKFELAMKIIDKYKIDRETLQESYYD*
Ga0073579_11907789	F032037	AGTAG	MWDYIQDDLTSVVFVSKKDKSLTIKIYGFDDNETAETFAHYTMSFLNFDYNTTGYSMPSKLIH*