Scaffold Ga0073579_1190717

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190717
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26651
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (22.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030253	Metagenome	186	Y
F030897	Metagenome / Metatranscriptome	184	N
F046025	Metagenome / Metatranscriptome	152	N
F046651	Metagenome / Metatranscriptome	151	N
F047926	Metagenome / Metatranscriptome	149	N
F058949	Metagenome	134	N
F095404	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119071712	F046651	N/A	MKITLTKKVTSPSGKKLAKGLTLSVVNEYGKELIEAGKAVKFGEEAPAEAPQVIEEEQINLN*
Ga0073579_119071724	F030897	N/A	MQVEAGVLHLEHSGLEIEVSVVWDLVQGGPIYALKGDKVFMSLTAEELKALYVLYRDIELKGKIEDA*
Ga0073579_119071731	F095404	N/A	MFLTNYTTDKVKLAFMYVEMLRSNWGNLDDERKQQLLKQISELTNVDFITQEFESKL*
Ga0073579_119071734	F030253	N/A	MLKKYFRKQLHKRYVSKYLAETRWEIINTVIVASATEYNYEVQKHLKNLGGLVRKYERRSRWLKF*
Ga0073579_119071742	F047926	N/A	MWIEIAKNTWAQARNEKDAERIKKKWKDYKKKQGDLTSRHYIVNYIENENTIK*
Ga0073579_119071744	F058949	N/A	MFNNNSYEYKKAIRAKAAKAFGPTIKLDLFLEFIGFWDAREYKNANEIRTEAKDMHLYKVVSYMNQYTDG*
Ga0073579_11907177	F046025	N/A	LYEGYFNQAIAGVDFHYRKGQVEVLPAAVAQRYLNAGFCSVVEEKKAAKAERAVSKKTTKRTTRKAK*