Scaffold Ga0073579_1190361

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190361
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39928
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (25.35%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004489	Metagenome / Metatranscriptome	436	Y
F013533	Metagenome / Metatranscriptome	270	Y
F016009	Metagenome / Metatranscriptome	250	Y
F031863	Metagenome / Metatranscriptome	181	Y
F051962	Metagenome / Metatranscriptome	143	Y
F056582	Metagenome / Metatranscriptome	137	Y
F057337	Metagenome / Metatranscriptome	136	N
F071647	Metagenome / Metatranscriptome	122	Y
F071664	Metagenome / Metatranscriptome	122	Y
F090239	Metagenome / Metatranscriptome	108	N
F093690	Metagenome / Metatranscriptome	106	N
F100396	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119036112	F051962	N/A	MTKKQRRADIIKNLTQTIESESVKQNGNMELVAKLVKKLETIKDGTFVSKMRKRKV*
Ga0073579_119036113	F093690	N/A	MSRIKNLLDGLDLSEAEIEQELYLRNDFDYQWESYVKSEDYVNMINDEISRVSKIYHQFDIESALQYASDGINIQPEEIGKELYDKLFSERVLEYLNKQND*
Ga0073579_119036117	F100396	AGGA	LFKESWKIAPKIANGEVMIRLDDDDLLDSECLEFVSMIFSETPDLDFAYGNSVLFKGKSLFQMMETKTPFDFAKSKATWSGYIEGYPYNKPWSFTEDYFDKPKNISSIIHSSKLNQFCIFHPYMMRTKSILKVVDKITMTSNFVDDLEFLGSLDNLGLRYASLKKVLSYVRKHDEGSITEEGKKINGVNLWDDIFRVRDEVDFLRPNGTEFKSNITKIKVPYNYSTQIDSEMKETFNNLLSNIDNILKPKPVFKDKFDWRRF*
Ga0073579_119036124	F056582	GGA	MARFKTYKIEKTPTDKFTEMVTISKKIKGEIVERKFIDEQKAKAWIEFGAAFKLINNGAKKVKSELGSIGIVDKAW*
Ga0073579_119036125	F057337	N/A	MNYSELNKMTVEDLRNINKMVVETIKSKKSLLALETKDSLYVGAIVSVDHPKMAGHELKITKINRTKAVCEMVNGKGSYNVPLTMINIING*
Ga0073579_119036126	F031863	N/A	MYWAKDMIPMNGNLFVVKRRFRHEPFQKVLNHFGSKTICENYHCETVIKGGDGFYYLCDKVDDAKII*
Ga0073579_119036127	F071664	N/A	MIKKIKSKLLTYLFTDWVKTETDLETLKLTTQMLKNREIEVTGIKPVLGFRSHVTNTEIQ
Ga0073579_119036130	F071647	N/A	MTLRKTISKSEFTKSIESAKSNPFNNVRKPSTSKYVMLEGIPHKWVNGSLVSLTKLSK*
Ga0073579_119036133	F004489	N/A	MANAVQCIIAIDNVKTSVQGNDPRGWMKACAEETLLKGKGGKYFKKCLIKKIESTKEHIENPAGYADELYNEIKGKCS*
Ga0073579_119036143	F013533	N/A	MFKAEDIKTVEGFRKLFGEPRKGMLMDLSAEFIDSYHRYGTDPFELVDGFGLDWVKLIMDYNEDIEEYELCAIFRDLINEYIETKTKVN*
Ga0073579_119036157	F090239	N/A	MKKKLIKTQYGIQITKPWNQSMYDWNDKIGKLIKIDLYQKLKEFYESTDVDGMNRIASSFGASYGDGYDVDSIYDSIFKDLQNLENYQLNEELDWLVKHNIVKEPEFKFVGYDK*
Ga0073579_119036159	F016009	N/A	MDLKKYNSEMTRYRIIEHQLRDKSVFVVEWNDRWFFGIWGRWHERFHCFKLEEAMEKIQRLIKIKNK*