Scaffold Ga0073579_1190229

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190229
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18082
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (17.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024647	Metagenome / Metatranscriptome	205	Y
F058912	Metagenome / Metatranscriptome	134	Y
F097115	Metagenome / Metatranscriptome	104	N
F103238	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119022914	F058912	N/A	MGLKDKLAKKILEMKLNQATKHMSGVIQKLQQQFDELVSSDRAKK*
Ga0073579_119022915	F024647	N/A	MNYLVQPQSLIDRAIRIPSFSSMFSKEQIQFSELSDIATQIVEEWSDDWDEGHGFGSSDGTYMLKDFIDTVISNFTNSVYKKSGYQTVFNPTLSVEYKYSESELVSFEDDGQF*
Ga0073579_11902292	F103238	N/A	MTQIKLKEIVQEVLTINLVDWLTKSQIELIELELEVAGIDSEQSVTEFIFSKSRTFESSLL*
Ga0073579_11902298	F097115	N/A	MEINYILLGIVSSVMVFLLGYTVVVIFNLKNRIDYLESFLEDTDEKIDIVVDKSNQNLTTLLEVLEGKVEGNQKDIIALLDSRLDKLEYKFRADVTSGTEVLKVIEASKKSNERLDEFIRTFQAQ*