Scaffold Ga0073579_1190155

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190155
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12175
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002188	Metagenome / Metatranscriptome	585	Y
F003777	Metagenome / Metatranscriptome	469	Y
F007086	Metagenome / Metatranscriptome	358	Y
F081358	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119015512	F007086	N/A	MTKRELYDIINEEVVNFKKGKINEELNESDKDLIRKIIRQEVSAIFFDLFKKRKSWGA*
Ga0073579_11901552	F003777	GGAG	MSSRIKPNIVTPVDDRQRFKDLVLETFQDMEIFSHVPDSISLDGVLFTVTLSNKKFIFQDVSVDSISDYVDIYLQGIKKTADTYSVIDNGTDIVINFTENITLDPPSIVKTDFSVKGKIVSR*
Ga0073579_11901553	F002188	N/A	MAIKDLKKILKQVHEPDEYQLTPENMNHPLYWIWKLANGRMKDLDILLRGFRPEHARFDIFINGQFIIEDDYLFEHSGKDFLIKFKKENFGYNLEIDDDIKIEGDIQVDE*
Ga0073579_11901559	F081358	N/A	IMIKLKNILKESAQSDKLSREIDKSISKIDDSMSYVDFAHAVAKVLKNEYGSHLYDKFIKELKKKL*