Scaffold Ga0073579_1190110

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190110
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56043
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (55.07%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000839	Metagenome / Metatranscriptome	866	Y
F006307	Metagenome / Metatranscriptome	376	Y
F007119	Metagenome / Metatranscriptome	357	Y
F012719	Metagenome / Metatranscriptome	278	Y
F026287	Metagenome	198	Y
F051178	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119011010	F007119	N/A	MIRGQVPKFQVLKDNKVLKEFDDAMDTAIFALNNEYGPGMDIYTNDKQASETWTHFDYKENL*
Ga0073579_119011011	F051178	GAGG	MKKGKCTVCKKVFTVKKGESLKGRLGIIPVDLCKTHLKKVLSFDEMYLNDTRASA*
Ga0073579_119011016	F026287	GAG	MVKIANKLVKKGLIYLTFLLFLFTLCSCTVKSCKIRPDLEKIGDSALKNKENLTETNLQHANVRCKY*
Ga0073579_119011017	F006307	N/A	MCVVNTNINRNMEKYCLNCGHDCHCGGDCMKDYDGNGEIKCCGNCRHDKKEKKTTNNEDLFNGA*
Ga0073579_119011027	F026287	N/A	MVKKPLLLVSFSIILFMVCSCSIKSCKIRPDLEKIGDSALKNTSNLAETNLQHAIARCKFSYK*
Ga0073579_119011028	F006307	N/A	MEKYCLNCGHDCHCGGDCMKNYDGNGDIKCCGNCRHDKEEKKQTNNEDLFNGA*
Ga0073579_119011054	F000839	GAGG	MLEKLRLTESFIIQGKLDKVSSVDTKLIKNHILSNFTLDARYEDDQYWYMKDYVKVPYHQHIQWTQDWLRDHFRAEHARTLVPTPIDSIRGIVQQTGENVNTHHNVKDWHLDESPEVSCLYTVATGEEKSDVIFEYDDGRNKHRRWRVPLKQDQFILFSSNLNHYITHNKNKDFLVNLSLHFQLI*
Ga0073579_11901109	F012719	AGGA	MDKYLKWIATGFLMVGVGANSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH*