Scaffold Ga0073579_1189863

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1189863
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19576
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F004956	Metagenome / Metatranscriptome	417	Y
F005495	Metagenome / Metatranscriptome	399	Y
F021404	Metagenome	219	Y
F022084	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_118986310	F004956	AGGAG	MKLISPNGKSSVIAHPSKVESLKNMGWKEEAVHSQDKIKPSSKKKSKDEVENGNT*
Ga0073579_118986313	F001582	GAG	MPLESALDFNAYVDTTTGHGVTATFFEVQQSLWDDFPLIDTLFDIDSGFSKNINIIIDQEYFNIESGSVPVAGYQPRAIVKASDVPYISQEDKLLVDAITTNRGNVLKPATTFIVRTVEPDNTGLVSLVLEEE*
Ga0073579_118986314	F005495	N/A	MLKWNGGSNTPNLNMKKYKILTDTMAGGSKVHAGDIVELTDCEGHSLCGYGKAEVHVAKPKAKKEDRSVGLETSKVKAPKTRAKK*
Ga0073579_118986321	F021404	GAGG	MTYTIGDKINYFFKGDEDNEPCEDVMIVKALKDLDNEEVFKLKPTTNNKAVLVKGEYDRSTGKYFATKYSDINSDTLKAGNTLVFTSFIY*
Ga0073579_118986322	F022084	AGG	MKHKKYLKELFKLIEGKGYTIECECEGEEITKDEALTQVDDAHIYIIDKDNHSIGWIYWTFWNDWDESISDYTIELD