Scaffold Ga0073579

Basic Information
Taxon OID	3300005239 Open in IMG/M
Scaffold ID	Ga0073579_1189859 Open in IMG/M
Source Dataset Name	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005239 Open in IMG/M

Scaffold ID

Ga0073579_1189859 Open in IMG/M

Source Dataset Name

Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16960
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (95.65%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16960

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (95.65%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location Name	Gulf of Maine, USA
Coordinates	Lat. (^o)	43.2393	Long. (^o)	-68.368612	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Maine, USA

Coordinates

Lat. (^o)

43.2393

Long. (^o)

-68.368612

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034916	Metagenome	173	N
F041217	Metagenome / Metatranscriptome	160	N
F059018	Metagenome / Metatranscriptome	134	N
F070161	Metagenome / Metatranscriptome	123	N
F105230	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_118985912	F059018	GAGG	MAVPKLKVSPALKKKLAEIDEMLEDAVERKMTDVARTIVLASPVDTGAFVNSWSFKDNLGGGRSKSSDNKPRGRDKGAERGKGLNSLVNDIKKTVEVGSPGGSVKEGIALQAGNYYFINRAPHAIEVERKKQIVDKIIRQHGR*
Ga0073579_118985913	F070161	GAGG	MSFNARDLLKLVQDFGETLTLRKVTTDGTYDAATGTLSGSATTDYSFTGYFYNLAEGTSDLTQTRKGRRACVIPAKGLTATPDDQDQILGNGDTVNITTVRTIFSDGQAVCYLCEVYD*
Ga0073579_118985915	F041217	AGG	MTPDYSKLPFQLDWVHTVKRPFSSAGTQWETGDFFDWKQRSISWENVLTLFNQGFLRQEPPSEKPERVAVGDGLDELDQDELSAIVKGINAKVKQFTKTEREYNTKKCKASTVTKKQRGHIRTWRNSPWSDWEQA*
Ga0073579_118985923	F034916	AGTAGG	MPAALPYKKAIANRIRKMIRDGVAMKDIMVSIQELQDAPSSFATFYKTYGQDIAQERSDIVGKVGNVVVQQALDGDFKSQELFLRSKGGWSPNSTLNENEQETDADTDESAIDALMTLLGKSRDPSDNSE*
Ga0073579_11898596	F105230	GAGG	MANINHKRGDTFQLDFTLEANDVAVDITNFDIRAQARNAAGTLILEWNETNSGVNITNASGGLFNFKSEATYSSTPTGQLATESWPLGVMNVDVEFTDTSATPDSVSSSETFTITVLEDITRD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073579_1189859

Overview

Ecosystem & Geography

Associated Families

Sequences