Scaffold Ga0073579_1188925

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1188925
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46653
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (51.72%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F010682	Metagenome	300	Y
F023840	Metagenome	208	Y
F027502	Metagenome	194	Y
F039113	Metagenome	164	Y
F066737	Metagenome / Metatranscriptome	126	Y
F080077	Metagenome / Metatranscriptome	115	Y
F098268	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_118892528	F010682	GAG	MVYTPQSNWKYDKNLYHPIQSGPQRTGNDQNLTDTYLTISSGYIPPSNIQQTWNGVLDQGADFGRIPVGPPNLSGYFSTEWKAITPAPSGYWTNYENVNPRASGLLTSYEGYRQQGLYSTANSTVQTALGPQPGLRNFGSFTWYGEQVPDNQLYSPFQTPGSNTNTSDGGGITGGAVAQPRIAAPALTNPTNDQSGSRAAWVYHYPVYCQTFTESRYTGVPGQMGAPVRNSYRGKSSRYVPNYGSVYGKLGEGVRNMVRTFSPSVNSSNQKSV*
Ga0073579_118892530	F080077	AGGAGG	MSINPNQVHVSKIYPGNYTNVLRYWHEEKTMQFENANGVQTSYTNQPVGGPVGVVFQPGWIAQQAVGYLDLS
Ga0073579_118892535	F001215	N/A	MVDRPFFRGAKINSGTTVISDQGNPDFSDLIQLVRVGDIPSEDGAMVEDIFLVSNEGYPDDSGVRTAAFGVYVYAPNQAAPSTSTALLVGKFQVGLSGATEGVITRVELPALVAPTPQVGDTSLVYPIERGKAEAMYLEKGYILCVGYFGDGPAAVSGGLSTSGVSIMAQGGFY*
Ga0073579_118892536	F098268	GAG	MLAPLPFKKKFRPDQNLKDFSILFDYNYASMWTRWRRGYELYMYTNQALVGLNYTFRYAMNGQAGSGGTEIPGLMYMYPSSEQDMGMRMVVIKPRDSINLLDLGLAVKSVFDYDTTNKIIGVELTGNFGAPISFTTGEVFSDRFQADGVPKTTYNNYTVVGVGTKVGGPSVPASEAVQDTLFLSMTPDTSWTTIADQTFKAPAQSVPTVGEFLSSAMRMGCNCPDYLGREDFNLYKYNQKRNYPYTDTQDLKPGIYDPGSETFTGERPVQTRDFAGFTRDFGFIYTKKLLDLPTYQDSAGSSYSDPNVLYFQPRFCKHIYASFWDMQNRFENYKYLTAYLAQPNDEPMDDRYREYFYQTLAKQTRFLQSTEALQWWETYSPAKNTVPNHVLYSDMNPTMVKVLNFDTLASGVTSTLVPSGFIMFDIDEFNPLQPIPPSERPIIDGGIYIDGVASGVAPLITYDGGQYANGAQLPPLFAPAINGGTY*
Ga0073579_118892539	F008401	N/A	METPELLTIAETAKLLNCSAGFVRKRITLTESNQDGGWPKETFVNLQPRGAKSLYRVNKVALVAYLNGEEEAKVEEAELPAVVCSV*
Ga0073579_118892541	F023840	N/A	TLEDDFTLTRLKNVAHELRGEARDQYLWKTIFRFVCRERAYKCVMKEMGLNIDTNVDIFDSDDE*
Ga0073579_118892545	F039113	GGAG	MEILREIKEMRDAINSIDVSLQLLSSNQNDKRRTTAFVSKKILCQRLNIPSVTLDKLIHQGIVSDGETGLVEGTHYCKVDPSERNSSKFLFDPLVVIDSAWKNFKNV*
Ga0073579_11889256	F066737	GGA	MPIHICHELNKKYLHLKWGEAWQAHVDGETHKSPFNISELPVSFTTYDLEFVRKKHLGF*
Ga0073579_11889259	F027502	GAG	MNFRERQLRERDVRKLAPELDAGSFMQLYMESNFPHTSSIPSPGQINQDVSLQQGTNDLKLMKKPLSGTKYDNPGGF*