Scaffold Ga0073579_1187769

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1187769
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11177
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015092	Metagenome / Metatranscriptome	257	Y
F027515	Metagenome / Metatranscriptome	194	Y
F050747	Metagenome	145	N
F057372	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_118776910	F057372	N/A	MNKHELTDIMLEMVEHAGVELILEELVTAMSADELGENVKHLDQHLFENHFLTRED*
Ga0073579_118776912	F050747	N/A	MSKQGKNLESMEFWTVIEKMDFNGRGHKAASRWLIEDSGLTFSELKNVHNVANRKASYMMRLLNGVTGVGDDGFSDMCWQIIANGQEAYKNATVESAQEMIDNNDYTESFAYAFHEVDDIVDEQQRANLFLKRERAMKHIEQMRQMGGGFDQKLVAAFEHADNSNKRKLAIGFPELFEHLVD*
Ga0073579_11877696	F027515	N/A	MKMSLEDQQMNKFYEAMLLVGSLTKEQQDRFISEVKHQQRQSVINELNIGTIVKINHKKISPMDQFRITKINRKNVKCQKLNSSIIYTVTPSLLEVIK*
Ga0073579_11877697	F015092	N/A	MIEKIKSKLLTKLFISWVNEEFDVELLEASKAMIQQRQDAVNTLADQANPPRPIGFQIPTGGLSSL*