Scaffold Ga0073579_1186544

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1186544
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6853
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007775	Metagenome / Metatranscriptome	345	N
F022778	Metagenome / Metatranscriptome	213	Y
F040114	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_118654410	F007775	GGAG	MKIDIELLHKERKQWRENSLLQSQSILRLSQELDNLRKQKEILQEKLLKSATQD*
Ga0073579_118654414	F040114	GGAG	MSNEKYKGEWTSKEVNFWSNKKMQKFDERRKRKLLTENIIRMEAVTKFINVSLFPIINRAYKSGRNNFLTPAEKLDYLRRFCEGRKLRNNDVIKASKEIS*
Ga0073579_118654419	F022778	N/A	MTNGTNNSKRRIVSINSCVKNDDGTYTFIGTRRLHGPVRDTKNKTDNVRRQFKLTRNE*