Scaffold Ga0073579_1184212

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1184212
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6528
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010473	Metagenome / Metatranscriptome	303	Y
F019630	Metagenome / Metatranscriptome	228	N
F028771	Metagenome / Metatranscriptome	190	N
F030048	Metagenome / Metatranscriptome	186	N
F042278	Metagenome / Metatranscriptome	158	N
F095051	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_11842122	F095051	N/A	MNTFTITFKNALGEFKTEEITLDFVTVQGVIAWFEETIGLRVKSISKH*
Ga0073579_11842123	F042278	N/A	MKVNESLWEALKNTIEMHTEQDPNITDVLINYQVKIKWS*
Ga0073579_11842124	F028771	N/A	MSFLKGNLGESLWLKELSNTHTHIEKAPNKRFYDWDIKANYKGREVTYEVKYDAKGYYYADRYNRPVNIYIEFQNTRKDEDSGIIASKATYYVYILKSLDNVETAYVFNRLELLSYLKNADVKVKGNSFGGDNNAKGWIPPLSTLEHLILKKIKLK*
Ga0073579_11842126	F030048	AGAAG	MLPEELCKNQEKIAYKSCVDSYFSNGDRQDIMEYWIQLFDQKRFCEAKGVEKALELIDIYEELNAKD*
Ga0073579_11842127	F019630	GAGG	MPKIKNKIVLKNCNYQHQQYCFKKGFIIYPVVSGKMFKIYCNRIKGNYYMKGKEFNKQDVFQEIWNLYTKIYNYEFNKIRD*
Ga0073579_11842128	F010473	N/A	MNLIRYEIKAGFFKGFLFGVRHYPFDDEEMYEEDIVLYIGIFQIILTLIYEK*