Scaffold Ga0073579_1184020

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1184020
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6541
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025055	Metagenome	203	Y
F032303	Metagenome	180	N
F069319	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_11840202	F025055	N/A	MIEIKNNTIKKTFAYKGEDNFAFLKNEVFWLNYLKSKWVPELIEVGDNYVITRYYGPDLNTQRNNKVKLADDLSDQTLEMYKFFKEKNVFKLNGALSNLTMNGNQLVAFDWKWARFRTDKYTDYEMFSYEKWLSKIDTELVDKLKCMI*
Ga0073579_11840204	F032303	AGG	MIKHIAEIEALDFASKQEHKDNWHKDFYYWKRHLLALKNWPWLKKFYKGGKWLGHFDEKLNGVYWYNLQGDEMYDGFLISSKVGVGIRLGRWLEKNIKYKTNWSCCSKQYVKFNERLGFEIKSMDNIEEQEVFLLCRKKY*
Ga0073579_11840207	F069319	GGCGG	MLDSYTFKPSELPKIYRVQIKDIIKDIVNDKTDLYWKNYTDEEFNIDEQTAISVSCKEDKVKVISTIYHREFFGEGVYRLWNRFLYSKDFRETGGSKKRDGVHINHPVLEQQIDFVEKLNPKFYFISRQRTNTRWLKYYFDTFNKEYNRNLVVNDNQYWVCGGKKENCVQTIIYPKDMKVPLKQYK*