Scaffold Ga0073579

Basic Information
Taxon OID	3300005239 Open in IMG/M
Scaffold ID	Ga0073579_1178384 Open in IMG/M
Source Dataset Name	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005239 Open in IMG/M

Scaffold ID

Ga0073579_1178384 Open in IMG/M

Source Dataset Name

Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14003
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14003

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (35.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location Name	Gulf of Maine, USA
Coordinates	Lat. (^o)	43.2393	Long. (^o)	-68.368612	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Maine, USA

Coordinates

Lat. (^o)

43.2393

Long. (^o)

-68.368612

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021402	Metagenome	219	N
F033599	Metagenome / Metatranscriptome	177	Y
F050679	Metagenome / Metatranscriptome	145	N
F077486	Metagenome / Metatranscriptome	117	N
F081764	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_117838410	F033599	N/A	MFEFDDKKLGYTAIVYVMESTNSVIVHFDGFNNLKECNRFSHQIMDDLGIETLFSSQNQTLH*
Ga0073579_11783842	F081764	AGGTGG	VHDVVQFFVTENYETLDDVINSDKIQKDIDSYLAFNDKDKYKFKFIVKNLKATAQNHLANLAELEQQTFKKEIEYTAWLPNVETYWLMYLDLVGTKNFGDLKNCFGSAKLSPLKNPVKAAKKKTDKPVIDNRIDDWVYSNVKVPVRPYFSDVMQISLYKNSCPLPPFLSYASNCDRKLFTENNCDELKQENLDQAIKILQVYEKAWQKKLEIADGDVEKLAWLCVPDVSDIKKNTFMWENVPDEYKQKFLDVYGL*
Ga0073579_11783846	F021402	AGGAG	MLTTNLTVDELDRFLQISSFCDSKMAKVKAKSLPTMYKVIENTIGIGEDADSIKNLDKYAATLKLTLTSRQITIYDFVLLVMLDAKASDRELIYLRNFPHRLSLRQMKRMYLDWSHTKIGYEYQKALKNVCKYANKNLKKYI*
Ga0073579_11783847	F077486	N/A	MLNDLDSLLTESERKYMIRNTKTLTNPISMFKIDIVKVFKKKETLKDIFKCKKLQKKHKLQDFRSI*
Ga0073579_11783848	F050679	N/A	MANKTKKNPKVLQEIYEELATGASIRSCLSPRNKKEDRPCWQSFRTWMAKDPEIRKNYEQAKTDGIEYLLSDATDTINEALENSKFKEKTDLGQTHLIKSFIDLTKWKSERLAPKTYMKKDSLQLMGSDSSPLVVKWDK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073579_1178384

Overview

Ecosystem & Geography

Associated Families

Sequences