Scaffold Ga0073579_1177661

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1177661
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6658
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005208	Metagenome	408	Y
F005656	Metagenome	394	Y
F006091	Metagenome	382	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_11776613	F006091	GAGG	MDNEFELPDYYNTSKPKVKEELVKRKCFTCGKEAKMGKFERYCNDTCRSRATKHYSGSYGVVL*
Ga0073579_11776614	F005208	AGGA	MTNEDLYWLRVEKLFTMYNNITDDLVYKAMWERKLKELLLRGFNGQ*
Ga0073579_11776618	F003531	GAGG	MKRKTWTENETELARQLLKTHSYATVGKMLHRSKNSVIGQFYREKVLNGYVPEPFSKYTRKKEKDIKAIDTFQKNVELTIDF*
Ga0073579_11776619	F005656	AGGA	MKLRTLLNIQRSVEERAVPSDVLEFDSTHHSQSKDKEINILDLHLTHAIRILNNYLTDDVYPRYSNRKEINDHLDVIKDNLDD