NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073579_1173335

Scaffold Ga0073579_1173335


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1173335 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10024
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000497Metagenome1075Y
F002594Metagenome / Metatranscriptome545Y
F011527Metagenome290Y
F013138Metagenome / Metatranscriptome274N
F015799Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0073579_11733351F015799GGAGMTKTQMTTKTAVQYNSSGAAAGFGPEPHPPHQDPSAANTIQDKTKGNSSFHSDNAAFIKKIKR
Ga0073579_117333510F002594N/AMAKIPISRLNSAPEKYQPNEFNQLIEDLQDMVKILNSTYPKDQNDERERQVWLLGG*
Ga0073579_117333512F011527N/AMLVYFQFRRCGYYARGLVEADSLDAASRALWAEHVGTFKWEDQTNDMPENANCLTIEEYKYERSSDGKTEPENEARSQVG*
Ga0073579_11733352F013138GAGGMSNPFTRQAISNHNTKNYSVEDVKKSNARFYEKNPSAIEPAAMIKKAMQNPNDEVVLEQTRQENEMENIIGKLNITGSIY*
Ga0073579_11733356F000497N/AMKKIENKSDVKIVENKVSLSHREISKNKLLFRLVNTKREKSKSFNIYEKAKFSTNIELAYNNSYRKIDIDYDTTFNNRFKKVNLLVDFPQYLTKEKKSLYLDLLNSNNKFIKENKVSSEIIENQNYFTKLVNSL*
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Institute for Fundamental Biomedical Research
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