Scaffold Ga0073579_1171025

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1171025
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20715
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F037986	Metagenome / Metatranscriptome	167	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_117102520	F037986	N/A	MNKDLLPKELQDILTEESVSIIETALKEKVELSVEAALTSQDELYAEKLEELVTRIDSDHTSKMQTVVEAVDKNNANKLVQVIRKYETELNEGASGFKEQLVESISGYIEEYIDEAMPVAAIEEATKNKTAYSVLTNLRSVLAVDSSLMSESVKEAIVDGKSQIDELKSEFAKIKQENEHLKEAYNKTSAKLVLEQKVSSYSDKKAVYLKKVLSDKSAKFITENFEYTARLFDKKEKEQMAVIREEAISNRTVKADAPRIVEEKVKPSTPENPYLAGLDKMK*
Ga0073579_11710257	F074154	N/A	MNFFQLQNKLFFSDKRKQPDYIDSEGEHAFVPFLLNRWLSMYSKDTVSFTNNILNKYCSIFDDKQRMFRLYYNVIPRLQFKRISYVKKKKKDKTEEVEHLELIAKNKHISVRELKSYMEM
Ga0073579_11710259	F015734	N/A	VIVQRSALDSILLNNVCDVRFVRRDPRSGDGATRRMLCTKSYDILNSVNGRTTLNYRPPKGPKKINEAADNLLVVWDILMQNYRTINCNQVDLIKEIPASEFWPYFNENIYPMSAEQKAGYLNS*