Scaffold Ga0073579_1168838

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1168838
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13830
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (52.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F008595	Metagenome / Metatranscriptome	331	Y
F013639	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_11688382	F008595	AGGAG	MSNEENKMENQEPVIITFNDVEYRAADLNEDQMALAAKLNVAGKKLARLQEHYDDYVITNEYKNLVIESFDRAINAEDVAEVVEEE*
Ga0073579_116883824	F013639	GAG	MKIDKQKLKEKIEQGKSSHDIAMTYDVHPSTIRRKAKELGLKFETQSCWRKK*
Ga0073579_11688386	F001942	N/A	MPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLIVEFGNAKYTVQVKSRRATKEKKFVFAAENSRSMSGTYKNYHCDILAFVFFYNEHKRILFKSNTSSQNYFTFDKKIITDTMEIDSLQESLDTLSAVPVLNPII*