Scaffold Ga0073579_1168378

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1168378
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14913
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028035	Metagenome / Metatranscriptome	193	N
F046634	Metagenome	151	Y
F080521	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_116837814	F046634	AGGAG	MTTQQTFIPYAESKSAEDRIAYVKANPGKYMPKAQYDLIKGLNAKIDALDSKMN
Ga0073579_116837815	F028035	GGAGG	MITYEMLQQVEGDTDKHSNYQLNQYEFPFPENSVLIERDKEMNRILNKPIIITTSNNNNCQQ*
Ga0073579_116837818	F080521	AGGAG	MNINTVWTNTIDSMSSIKDKVIDKYNTTNMNPFPKNVNVTVKFDLVGTYSDLLKKFDSMSDKDMQRVVDILEKKSDIIQKIIMKQLDK*