Scaffold Ga0073579_1090952

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1090952
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1356
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007551	Metagenome / Metatranscriptome	349	Y
F016880	Metagenome / Metatranscriptome	244	Y
F065117	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_10909523	F007551	AGGAG	MMKNEEGLITAILTQSVEDARYTGFNKIDLKHKIESINWIMGNDPQFLTYCKLLNIEPSYIQNKVKTYNDTRITSQQKMLLKPIVESLLKQDNYKEKYDTARI*
Ga0073579_10909524	F016880	AGGAG	MTPQEYNKLREQEIIGQEMADETVKSIQLRKDIMKLALAESATNCTIMCGTLFAKFDVSIHKQMAKNLKTTLQTFFDNRKKNDCHVQMSGTLPDNEYAYDFMPIVDFRHNGVGV*
Ga0073579_10909525	F065117	AGGAG	MKKKTKNKKTKVKMTVDGYYTDDNGFWTIYKTESGMTVMKKEKKDNDN*