Scaffold Ga0073579_1047355

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1047355
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1488
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F019662	Metagenome	228	Y
F031532	Metagenome	182	N
F085566	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_10473553	F001086	AGGAGG	MKHKCTSWAIVATMERPDGTWYTDTITEIDDDTASAVDTFLTEYCEDKEKSKHD*
Ga0073579_10473554	F019662	AGGAG	MTDQEKKDFEWASSFYLYDDLDGDWVNWDEEKLHSEIEKLAWQPFEYWEGKNIYNEIEKLADSVRKYIKENNE*
Ga0073579_10473555	F031532	AGGAG	MSSRITKKKVKTFLTLRFRKEPMMMYDDTLDVAVEVIQDFLNCDPMDIGKLQSNTYNTIYNIEKEIDDTI*
Ga0073579_10473556	F085566	AGGAG	MIPYEIGKQLIDKIEKELGGKANGHEDYLEGKGTQFSFDLNGKSYSVDLWDEDIINDV*