Scaffold Ga0073579_1016691

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1016691
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2363
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025147	Metagenome	203	Y
F064201	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_10166912	F025147	N/A	MSMSNKKINKCPQPSYSCNASNYAFKGKPKKDNSSKGDIFQNCRSCGDYIKGDYRSNFDGRYCQDCL*
Ga0073579_10166914	F064201	AGGA	MEYIIIRRTKFEGSSVSDMLSIQKTAKSLEEALKYTTALKMLETDKRVEFNVLINIDNAFKYVNEPLLLKDEVA*