Scaffold Ga0073353_1067420

Overview

Basic Information

• Taxon OID: 3300005225
• Scaffold ID: Ga0073353_1067420
• Source Dataset Name: Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, bulk metagenomes as controls for mini-metagenomic methods
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4847
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.564833
  • Long. (^o): -110.86325

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080678	Metagenome	115	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073353_10674203	F080678	GGAGG	MFVKKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNSDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
Ga0073353_10674204	F088087	AGGTGG	MKASDGSVWLPVTVSSAPCEICKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEQFIAGGEE*
Ga0073353_10674207	F092976	GGAGG	MTVQEILHWKHELRQVLQEFLQVWQKCPRCGAKWADTAWDAESDHEWLIVECKAGHLFKADEEFWLFDYNGSGVYVPSEETEMTEVSAHAG*