Scaffold Ga0073353_1058668

Overview

Basic Information

• Taxon OID: 3300005225
• Scaffold ID: Ga0073353_1058668
• Source Dataset Name: Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, bulk metagenomes as controls for mini-metagenomic methods
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11782
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (100.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.564833
  • Long. (^o): -110.86325

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073353_105866810	F069506	GGAGG	MQLEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDTCFPNDIPELIMRTVEKIIGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFINVAGTVVYYEDIVRLVIKLLDQIQSALADA*
Ga0073353_105866811	F100012	AGGAGG	MDREKVLQALKEAQAEYNIKNLDRLVREAWEEGDVLYAEIVVELTERAVEILFNQHFLWVHIVESEDCEEWIPDGWYSFVAVHPETGQCLTFLNDPVYRCKSASFRARIRSADDAVDAVMRLAELIERNLKSRAVE*
Ga0073353_105866814	F080678	GGAGG	MFVRKVDAKTTPISEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRHGVLQAVGYKWRDIEEFEHMRVLVARR*
Ga0073353_105866815	F088087	AGGTGG	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDE*
Ga0073353_105866818	F092976	GGAGG	MMVQEILHWKQELRQVKQEFLQVWQKCPRCGARWVDISWDAESDHEFLLVECRSGHLFRADEQFWLFDCDDYSDAGVYVPSEETETTEVSAYAG*
Ga0073353_10586684	F104114	AGGAGG	MERLRLWRSMTQDEKFAAAERELKDAVVARYDEFADEWSISRSVEAIAPSALAEIVIQTVEALLGLQWQLEWDYDADADDMELDSGATAYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQVSLIKEVK*
Ga0073353_10586689	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLRLVQQA*