Scaffold Ga0073353_1038864

Overview

Basic Information

• Taxon OID: 3300005225
• Scaffold ID: Ga0073353_1038864
• Source Dataset Name: Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, bulk metagenomes as controls for mini-metagenomic methods
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5225
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.564833
  • Long. (^o): -110.86325

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015070	Metagenome / Metatranscriptome	257	Y
F051766	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073353_10388644	F051766	N/A	MAIKKQGIVSGSYAFSGVEDNGLVTLTSPIDDIYIIEIQSLTQLFNFISPYDIPIMVDNTIYQVTNVADYSSASDTLIYSTVNTPRGSKTIIECEIKAIGIKPNSSVIFSTQERWIVYPEKTYQLVDGGTQSFTFTDNSIAYLRLTGKRILPTQLTSAYR*
Ga0073353_10388645	F015070	GGAGG	MMEELEKEGFVGIADYVDHPSWESPEWKALNREFFTVLVDDLLDFLWEYYLPL*