Scaffold Ga0073350_143393

Overview

Basic Information

• Taxon OID: 3300005223
• Scaffold ID: Ga0073350_143393
• Source Dataset Name: Sylvan Springs Unknown 12.1A - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8708
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.699217
  • Long. (^o): -110.767467
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062912	Metagenome / Metatranscriptome	130	Y
F077497	Metagenome / Metatranscriptome	117	Y
F087443	Metagenome / Metatranscriptome	110	Y
F097670	Metagenome / Metatranscriptome	104	Y
F099549	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073350_14339311	F099549	N/A	MDTTLQYPYQIPDLKTLFLIDFGNIVREIVSLLTYSGISADTKTFDEEELKNKLRAAIAYALGLLASALGYSMSAKTQQDVQIAKESLKALFDRIVTDPEITYPDLLDIYFELIQVVSIILNYGTPIPQPRTGNYEIT*
Ga0073350_14339315	F097670	N/A	MNYKVFDKDIYTETDEIIIINLKTGETNHEIKMYFYDGKELKEIKDFQEYNLKLYEIGQKVQEEFTKFSTKYAKPPIGYIPISNIIYEFMLNRNNVILIAYANISKVENEVSKEITNDTIKIIVKSKTIFNKEWNFESTQNLSPEIKDNITKIIEKALKSAKTILKNNL*
Ga0073350_1433933	F062912	N/A	MDPQVILAETYNLFLISDIIDNNSDIDRELEQLLVGKDYTNMAKTIIYALIYTLNNDPAYRNIRQIYINEAVDLLYIIDRVEFNDEKIIKKFVNFLYQFYSYSLQYKINFIADKEKREFVKAKLDELINIVQWEQ*
Ga0073350_1433934	F087443	N/A	VLALQYLKNFLNIRYNMGQRKNYWMTFEDSDNVDYIDKEITKIGVDLDLDPSEIRAWIFKAFIYDSEVRAKILEYIKKNGQGKNQ*
Ga0073350_1433935	F077497	N/A	MDKERISEIEEIIERHLFDEANNTEYDLKKMDVIIKYLIYQELKEWGNSLSLIDEAISSKE*